Jot Engine
See http://jot.andstuff.org/. Some highlights:
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Full XHTML compliance.
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Written in Python.
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Uses a home-grown memory-mapped object store as the PageDatabase. This is not only fast, but it allows the code to be simplified greatly, as objects in the store require no instantiation.
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A WikiPedia-style diff engine (also donated to MoinMoin).
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Rudimentary support for authentication and access control lists to control permissions for pages and page trees. Fully-open wikis with no UserName authentication are supported as a trivial subcase of this functionality.
This engine is presently in use at AndStuffWiki.
The Jotwiki -- see http://www.jotwiki.net/ .
Some highlights:
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Written in Java.
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source code is GPL and can be downloaded from sourceforge.
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stores wiki page data in text files.
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support for access control lists and CAPTCHA.
CategoryWikiImplementation